rs32258605 SNP Detail

Summary

• ID
  rs32258605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18998923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCGGCTG GAACAGATGA
  CCGTCTCGCT GCCAGGGGAG AAAACAGAGG GGCCAGTCAC ATTCTCCTTA GATCCATATA
  GTAGATACAG GAACTGATTG CAGCCTGTAC ATGAATATAC AGGGGTGTGG CTGTACATGC
  ATGACTGGGA GTGTTGCTCA GTGGTTAGAG ACCCTGACTA GAAACCCCAA TGAGGGGCTG
  R
  GGGTGTGGCT CAATAGTAGC GTGTTTGCCC AGCTTGCTGG CCCGGGCCCT TGGTTGAATC
  CACAGTACTA TAAAAGAAGA TAGGTTGATA GGTGAGTAGT ACCATGTAGT GAACAGATAG
  GCAGGCCACA CACAGGAAGA GGCAGAAAAG AGATAAAGTA GGGTCCATAA GGCTTGAGCT
  GGCGACCAGA GAGCTTGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss46124586	mCV25048891	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs32258605					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18998923 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tssr64812	transcription start site region 64812			1298 bp upstream
Tssr70883	transcription start site region 70883			515 bp upstream
Tssr70884	transcription start site region 70884			170 bp upstream
Tssr70885	transcription start site region 70885			991 bp downstream
Tssr70886	transcription start site region 70886			1544 bp downstream
Vasp	vasodilator-stimulated phosphoprotein			Intron
				Noncoding-Transcript-Variant