rs32231662 SNP Detail

Summary

• ID
  rs32231662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109264022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCT AACATGGCCC GGCAGTGAGG
  Y
  TGGACCGCGA GATCTCAGGT GTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45622879	mCV23910271	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs32231662					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109264022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597311	regulatory region 597311			603 bp distal
Rr597312	regulatory region 597312			1721 bp distal
Rr597313	regulatory region 597313			within coordinates
Rr597314	regulatory region 597314			296 bp proximal
Tssr38345	transcription start site region 38345			62 bp downstream
Tssr38346	transcription start site region 38346			269 bp upstream
Tssr38347	transcription start site region 38347			296 bp upstream
Tssr42761	transcription start site region 42761			563 bp upstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			592 bp upstream