rs32224257 SNP Detail

Summary

• ID
  rs32224257
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95857268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTGGTT AGCTCTTGCT
  AATTGGCTCC TGCAGTGATC TCCCAGGCTG TTGTACACTG GAGAAAATTG AATGGCTGAA
  AATCAGTTAT TGCTTCTAAT CATGGCGGTA GATGCACTGT TCTCCCTGAC ACTGTCCAGC
  TTGGTGATGG GGAAGGACAT GGTGGTTCTG ATTCTTTTTA GGACGCTTCA TTGATGCCCT
  S
  CTTGGCTCTT CTTGGAACCG AATTTTGACT TTCAGGCACA ATACCACCTC CTCAGCTTTG
  GGTCTTCCTT TAAACTCTGT TCCTTCTAAC TCTTTTAGAG CATTGTTCTG CCATTTATTT
  TCTTTTTGCT GTTGAATCTG TCTAACCCTG ACCCCCAACT AAACAAGGGA TCTCTGCATG
  TGCTCTTCTG ATGGAGCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45622325	mCV22711215	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss147069071	ENSMUSSNP6180320	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32224257					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95857268 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530080O11Rik	RIKEN cDNA 9530080O11 gene			1376 bp upstream
Cpgi14458	CpG island 14458			1100 bp distal
Hook1	hook microtubule tethering protein 1			Intron
				Noncoding-Transcript-Variant
Rr398349	regulatory region 398349			1768 bp downstream
Rr595500	regulatory region 595500			1652 bp distal
Rr595501	regulatory region 595501			886 bp distal
Tssr37834	transcription start site region 37834			1886 bp downstream
Tssr37835	transcription start site region 37835			1711 bp downstream
Tssr37836	transcription start site region 37836			1650 bp downstream
Tssr37837	transcription start site region 37837			1628 bp downstream
Tssr37838	transcription start site region 37838			1605 bp downstream
Tssr37839	transcription start site region 37839			888 bp upstream
Tssr37840	transcription start site region 37840			919 bp upstream