rs32223740 SNP Detail

Summary

• ID
  rs32223740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3856986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGTCTG CTTTTCCTCA
  GAGGTCCAAG AATTTGCGAT CGTGCCCTTG CATGCAGCCC CAACAGAAGC TGTGAGTGAG
  ATCGACGCCC TCTACGATGT TTACCTAGAT GTCTGGCAAA AGTGGGGCCT GGAGGTGAGA
  CCATCCTAGG GACAATGGGT TCTATTGGCC CTGTTTGTCC CTGGACCAAC AGGCATGTCT
  R
  CTGGTAGGAC ATCATGTTCA TGGGAGACTT CAATGCTGGC TGCAGCTACG TCACTTCCTC
  CCAGTGGTCC TCCATTCGCC TTCGGACAAG CCCCATCTTC CAGTGGCTGA TCCCTGACAG
  TGCGGACACC ACAGTCACAT CAACACACTG TGCTTATGAC AGGTGAGCAG CCCCAAAGCC
  AAACCAAGCC TTCACTCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48139585	NES12121349	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32223740					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48139585	NES12121349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3856986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnase1	deoxyribonuclease I			Coding-Synonymous
				Intron
				Splice-Site
Gm15879	predicted gene 15879			1219 bp upstream
Trap1	TNF receptor-associated protein 1			849 bp downstream
Tssr4779	transcription start site region 4779			1735 bp downstream
Tssr136845	transcription start site region 136845			1993 bp downstream
Tssr136846	transcription start site region 136846			1970 bp downstream
Tssr136847	transcription start site region 136847			1830 bp downstream
Tssr139750	transcription start site region 139750			1240 bp upstream