rs32223739 SNP Detail

Summary

• ID
  rs32223739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3856473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGCTGTGAAC CCTGTGGAAA TGACACCTTC AGCAGAGAGC CAGCCATTGT
  Y
  AAGTTCTTTT CCCCATACAC TGGTGAGTGC TACTGGGCTT CACTGTCAGC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss48139583	NES12121348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32223739					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48139583	NES12121348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3856473 () rs orientation: forward

Symbol	Name	Function Class
Dnase1	deoxyribonuclease I	Coding-Synonymous
Gm15879	predicted gene 15879	706 bp upstream
Rr510754	regulatory region 510754	1568 bp distal
Trap1	TNF receptor-associated protein 1	1362 bp downstream
Tssr4779	transcription start site region 4779	1222 bp downstream
Tssr136844	transcription start site region 136844	1506 bp downstream
Tssr136845	transcription start site region 136845	1480 bp downstream
Tssr136846	transcription start site region 136846	1457 bp downstream
Tssr136847	transcription start site region 136847	1317 bp downstream
Tssr139750	transcription start site region 139750	727 bp upstream