rs32223737 SNP Detail

Summary

• ID
  rs32223737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3856327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTACAGGT AAAGCCCTAT
  GCTGCCAAAG CCTGAGAATA AACTCAGGGA TGTGCAGGCC TCAAAGCTGT GCCAAAGAGG
  ATGAGAGTGG TTTGGAGGGC CAGGTGACCC TCTTTTACTT GGGAGGTCCT TATAGAGTAG
  GGGTAGCAAT GTATATTACA GGACTTCAGG ATAAGGTTCT GGCTGGGTGG GTATCCATCT
  R
  CTCAGGTAGC TCTCACAGCC CCAGAGTCAC CTCTTGTCTT GTCTTTCTCT AGGCCTGACC
  AGGTGTCTAT TCTGGACAGC TATCAATATG ATGATGGCTG TGAACCCTGT GGAAATGACA
  CCTTCAGCAG AGAGCCAGCC ATTGTTAAGT TCTTTTCCCC ATACACTGGT GAGTGCTACT
  GGGCTTCACT GTCAGCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	PWD/PhJ
ss48139581	NES12121347	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	PWD/PhJ
rs32223737					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48139581	NES12121347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3856327 () rs orientation: forward

Symbol	Name	Function Class
Dnase1	deoxyribonuclease I	Intron
Gm15879	predicted gene 15879	560 bp upstream
Rr510754	regulatory region 510754	1422 bp distal
Trap1	TNF receptor-associated protein 1	1508 bp downstream
Tssr4779	transcription start site region 4779	1076 bp downstream
Tssr136844	transcription start site region 136844	1360 bp downstream
Tssr136845	transcription start site region 136845	1334 bp downstream
Tssr136846	transcription start site region 136846	1311 bp downstream
Tssr136847	transcription start site region 136847	1171 bp downstream
Tssr139750	transcription start site region 139750	581 bp upstream