rs32223736 SNP Detail

Summary

• ID
  rs32223736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3855948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGAGGG ACAAAGTCTG
  AGGTCTTGAG CTGCTGATCC AGCCCTGCCT ACCCAGCCTG TTACCCGCAG ATCCTGAGTC
  GCTATGACAT CGCTGTTATC CAAGAGGTCA GAGACTCCCA CCTGGTTGCT GTTGGGAAGC
  TCCTGGATGA ACTCAATCGG TGGGTGACAG TACTGGAGTC CTAGAGTATA ATGACAACCA
  Y
  TTACAGTCTC ACGCCCTCTG TGCTCTATTG TTGGAGCCCT GCTATCAGAT GCCAGGAGGC
  TCCCTCTATG GTGAAAAAGT ACCTTTGGTT TCCTTTATCC AGGGACAAAC CTGACACCTA
  CCGCTATGTA GTCAGTGAGC CGCTGGGCCG CAAAAGCTAC AAGGAACAGT ACCTTTTTGT
  GTACAGGTAA AGCCCTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	MOLF/EiJ	PWD/PhJ
ss48139579	NES12121346	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	MOLF/EiJ	PWD/PhJ
rs32223736					SNP	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48139579	NES12121346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3855948 () rs orientation: forward

Symbol	Name	Function Class
Dnase1	deoxyribonuclease I	Intron
Gm15879	predicted gene 15879	181 bp upstream
Rr510754	regulatory region 510754	1043 bp distal
Trap1	TNF receptor-associated protein 1	1887 bp downstream
Tssr4779	transcription start site region 4779	697 bp downstream
Tssr136844	transcription start site region 136844	981 bp downstream
Tssr136845	transcription start site region 136845	955 bp downstream
Tssr136846	transcription start site region 136846	932 bp downstream
Tssr136847	transcription start site region 136847	792 bp downstream
Tssr139750	transcription start site region 139750	202 bp upstream