rs32164260 SNP Detail

Summary

• ID
  rs32164260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80018102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG AGGATGTGCT GGGTCTGTTC
  Y
  GTGTAGTACT TGTCAAAAGT CTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss46111945	mCV25426647	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss145143013	ENSMUSSNP5926415	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs32164260					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80018102 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Man2a2	mannosidase 2, alpha 2			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr67437	transcription start site region 67437			1965 bp upstream
Tssr73220	transcription start site region 73220			493 bp downstream
Tssr73221	transcription start site region 73221			625 bp downstream