rs32134490 SNP Detail

Summary

• ID
  rs32134490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8756981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTAAATGGGT CTTCTCTCAT GTAGCTAAGT CCCAAGTTGC TGAAAGACTA GTGTAGCCCA
  GTTCCGTGTT GCCTAGTTCC AGGGTCATTC TCTCTGATAG AAAGTTCCGG TGGAGTTTTT
  AGGATGTGAA ACACTGTGTT TTTAGAATAA ATGTAATTTG GATGTATTTG TGTTCCATTC
  CTTAGTTTGT CCCTTAAATA CTGACCATAA AGGAGAATAG AAGTTAAGGT GTAGACAATG
  GGTAATAATG CTCTGTGCTA TCCCCACATC GTGCTGAGGT TTCTAGAAAT AAATAAAAGA
  Y
  CTAGAAGACT CAGTGGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGACTA TACTGTGCCA
  TCTTGTGAAC ATTTTAAAAG CCTCTGGGAA ACCTTTTCCT GGAAACCTGA CTTAGTCCTT
  GCCTGACACT CTGCTTTGTT TTTGGTTTTT TTTTTGTTTT TGTTTTTTTT TGGTTTTTCG
  AGACAGGGTT TCTCTGTATA GCCCTGGTTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG
  CCTCGAACTC AGAAATCCGC CTGCCTCTGC CTCCCAAGTG CTGGGATTAA AGGCGTGTGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45610482	mCV22979163	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss145983493	ENSMUSSNP4183293	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32134490					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8756981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588583	regulatory region 588583			1227 bp distal
Rr588584	regulatory region 588584			1158 bp proximal