rs32107866 SNP Detail

Summary

• ID
  rs32107866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:95404019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTGCAGA AGGCTGGAGC
  CTGGGACATA CTTACAGAGG CAGCTGAGCG CTGGTTATAT GGCCGGGAGC CCCTCAGGGA
  TGTCAGATCG ACCGCCGCTG CACAGGCGAT AAAGGCAGTA ATGTAGAGAA CCGTGGCAGC
  GACAAAAAAG ATCAGTAACT GTAGGGGGAA GGGCGAGAGG CATAAGCATC CACAAAGAAC
  R
  TCACCACCTT GAAGCCCTGA CGGGAAGGCC TGAAGTGTTG GGACGGTGCC ACCACAACGA
  GCCACTTGCC TCTAACCAGC TAAAGAAATG CCATCTCTTG TGTGGCACAC GCCATGCCCA
  TGTTCTTCCT ATGACCACAT CAGCACTTGG CCATGTGCCT GGCCCTCACA TCCCTCTGCC
  CACCAGTGGG AGAAATCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46290987	mCV25273818	ABI	CRAMUS_MOUSE	f	SNP	G	A						A		A
ss47626937	NES11436906	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		G	A	A	A	A	G	G	G
ss145632651	ENSMUSSNP5904595	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32107866					SNP	G	A	A	G	A	G	A	A	G	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47626937	NES11436906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95404019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm45767	predicted gene 45767			within coordinates
Pllp	plasma membrane proteolipid			Intron
				Noncoding-Transcript-Variant
Rr668025	regulatory region 668025			693 bp proximal
Tssr82509	transcription start site region 82509			1334 bp downstream