rs32099165 SNP Detail

Summary

• ID
  rs32099165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119238594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAGCAA AGTCTCATCT
  TTTATTTTCA TTTCTTACCT CATTAAAATA TTGTACTTTA ATTGTCTCTT GGTCTTTCAT
  TCTGCTGTCT CTTCAGTCCT CCTGGTTTAA TGGTTAATGA TAACTCGGGC TCTAAGATGG
  AAATCTCAAT CCACATAAGT CACCAGTTAA AAAACCATAC AAGTGCGACT AAAATATATG
  Y
  AAAATAAGCT ATGCTTGTTT AAATTAATTT ACAAAATGAT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTGTGTGT GTGTGTATGT GTGTATACAC AGTATATGTG GCCACACTTG
  TAATGTCTCC CATGTGGAGG ACAGAGGACA ACTTTTGTGG AGTCTTTTTT CTCCCTCTCC
  TTTTATGTGG TTCCGAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss45607211	mCV25417264	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147328400	ENSMUSSNP4636780	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs32099165					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119238594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			263 bp proximal