rs32077216 SNP Detail

Summary

• ID
  rs32077216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126429396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTTTCC AGCGCTGAGC
  AGCCCTGGGG ACAGGCGCCA GGCCAGTCCC TTCTGTCAGG GGCACATTTA GCCCTCGGCC
  CCGGCTTGTC CCTGGTGCTA CAGGCCAATC GCGGCTTCCT CCAGTCTGGG GGCCACAGAC
  CCCGGGAGGT GCTTTTACAG ACCGCTAATA AAGACGATCT TCCTGAACGC CAGCAAGACC
  Y
  TTTGGTCCAG TTTTGGGGGC TGGGAAGTGG GGAGGAAGAA GGAGGGGTCA CTACATAACT
  ACTGAGGAGG AAGGGGGAAA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTAT
  GTGTGTGTGT GTGTGTGCGC GCGCCTGCAG CCTGGGAGGA ATGGGGTGTG TGAATGGCCA
  CTTCGAAGTC AGGGAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46102587	mCV25379820	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss47257358	NES11560968	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32077216					SNP	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47257358	NES11560968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126429396 () rs orientation: forward

Symbol	Name	Function Class
4930451I11Rik	RIKEN cDNA 4930451I11 gene	244 bp downstream
Cpgi19716	CpG island 19716	1447 bp distal
Cpgi19717	CpG island 19717	724 bp distal
Gm73869	predicted gene, 73869	1299 bp upstream
Rr655626	regulatory region 655626	1596 bp proximal
Rr655627	regulatory region 655627	1879 bp proximal
Tlcd3b	TLC domain containing 3B	5 bp downstream
Tssr74840	transcription start site region 74840	1242 bp downstream
Tssr74841	transcription start site region 74841	1441 bp downstream