rs31991586 SNP Detail

Summary

• ID
  rs31991586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:99508527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCGAAGGCA GGTGTGGCTG GAAACTTAAT TTTGCTTGAA
  TTATGAGTCT TTCCAGCCCC AGATGTTGTG TCCTAAGAAG GGAGGTAGAG CCTGCTCTTC
  R
  CCCCTTTCTG TCCCTGAAGG TAGAATATCA GCTCGATTAT TCTCTCCGAA GTAACCATAA
  TCTCAGCTGT TAGTAATGTT TCCTGTAGAA CTATCATTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46092987	mCV24185789	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss145517550	ENSMUSSNP4532224	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31991586					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99508527 () rs orientation: forward

Symbol	Name	Function Class
Rr400465	regulatory region 400465	191 bp downstream
Rr652012	regulatory region 652012	194 bp distal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	Intron
Tssr68077	transcription start site region 68077	200 bp downstream
Tssr68078	transcription start site region 68078	180 bp downstream
Tssr73711	transcription start site region 73711	1017 bp upstream
Tssr73712	transcription start site region 73712	414 bp upstream
Tssr73713	transcription start site region 73713	399 bp upstream
Tssr73714	transcription start site region 73714	313 bp upstream
Xrra1	X-ray radiation resistance associated 1	Intron