rs31972595 SNP Detail

Summary

• ID
  rs31972595
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111270589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT CCAGAACACC TCAGAGTCAT
  M
  GGATAAGTGA GGATGAAATT ATTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45592126	mCV24661317	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147203443	ENSMUSSNP2165378	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321261802	CHEV_4_111085997	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31972595					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111270589 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Bend5	BEN domain containing 5	1614 bp upstream
Cpgi14589	CpG island 14589	1356 bp proximal
Gm68593	predicted gene, 68593	within coordinates
Rr597456	regulatory region 597456	1124 bp proximal
Rr597457	regulatory region 597457	1645 bp proximal
Tssr38381	transcription start site region 38381	1567 bp upstream
Tssr38382	transcription start site region 38382	1744 bp upstream
Tssr38383	transcription start site region 38383	1846 bp upstream