rs31948336 SNP Detail

Summary

• ID
  rs31948336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111272888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT GTATTCCCCT TGGCTCTTCA
  Y
  TTTCTGCTTC TCTAGCTGCC TACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45589332	mCV24661304	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147203461	ENSMUSSNP1978553	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321261807	CHEV_4_111088296	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31948336					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111272888 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
Bend5	BEN domain containing 5			Intron
				Noncoding-Transcript-Variant
Cpgi14589	CpG island 14589			168 bp distal
Gm68588	predicted gene, 68588			460 bp downstream
Gm68593	predicted gene, 68593			1914 bp downstream
Rr597456	regulatory region 597456			675 bp distal
Rr597457	regulatory region 597457			633 bp distal
Tssr38381	transcription start site region 38381			655 bp downstream
Tssr38382	transcription start site region 38382			473 bp downstream
Tssr38383	transcription start site region 38383			432 bp downstream