rs31937330 SNP Detail

Summary

• ID
  rs31937330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109262540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT GTAGTGTTGT GAAGGACTGT
  Y
  TTTTCTTTTG AAGAGAGACC TTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45588040	mCV23910296	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147197539	ENSMUSSNP1717157	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321254084	CHEV_4_109077948	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31937330					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109262540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			1192 bp proximal
Rr597311	regulatory region 597311			within coordinates
Rr597312	regulatory region 597312			239 bp distal
Rr597313	regulatory region 597313			880 bp proximal
Rr597314	regulatory region 597314			1778 bp proximal
Tssr38345	transcription start site region 38345			1404 bp upstream
Tssr38346	transcription start site region 38346			1751 bp upstream
Tssr38347	transcription start site region 38347			1778 bp upstream
Tssr42761	transcription start site region 42761			902 bp downstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			within coordinates