rs31932279 SNP Detail

Summary

• ID
  rs31932279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118285749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAA GGGAACTGGC TCTGTTTCAC
  Y
  GCGGGAGGGG GGTGGTGCGC ACCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45587626	mCV23178350	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147308076	ENSMUSSNP3431925	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321283183	CHEV_4_118101157	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31932279					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118285749 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14684	CpG island 14684			504 bp distal
Elovl1	ELOVL fatty acid elongase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr598393	regulatory region 598393			417 bp distal
Rr598394	regulatory region 598394			283 bp distal
Rr598395	regulatory region 598395			659 bp proximal
Rr598396	regulatory region 598396			1160 bp proximal
Tssr38657	transcription start site region 38657			1654 bp downstream
Tssr38658	transcription start site region 38658			358 bp downstream
Tssr38659	transcription start site region 38659			244 bp upstream
Tssr38660	transcription start site region 38660			1129 bp upstream
Tssr38661	transcription start site region 38661			1150 bp upstream
Tssr38662	transcription start site region 38662			1189 bp upstream