rs31931819 SNP Detail

Summary

• ID
  rs31931819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108490293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TGAAGCTGAC ACCCAGCATA
  Y
  TTTAGCTGCT CTGAGAACCT CCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45587814	mCV22674760	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147188688	ENSMUSSNP5635613	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321252727	CHEV_4_108305701	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31931819					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108490293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cc2d1b	coiled-coil and C2 domain containing 1B			Intron
				Noncoding-Transcript-Variant
Gm17354	predicted gene, 17354			747 bp downstream
Rr597206	regulatory region 597206			564 bp distal
Tssr38309	transcription start site region 38309			2 bp downstream
Tssr38310	transcription start site region 38310			within coordinates
Tssr38311	transcription start site region 38311			24 bp upstream