rs31930239 SNP Detail

Summary

• ID
  rs31930239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:98307625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGC AGGCAAAATA CCCAGACACC
  R
  AAAGTAAATC TTTTAAGACA ACAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46084277	mCV24171265	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss145478323	ENSMUSSNP2080290	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31930239					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:98307625 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930558N01Rik	RIKEN cDNA 4930558N01 gene			467 bp downstream
Emsy	EMSY, BRCA2-interacting transcriptional repressor			mRNA-UTR
				Noncoding-Transcript-Variant
Rr368380	regulatory region 368380			1437 bp downstream
Rr651648	regulatory region 651648			1883 bp distal
Rr651650	regulatory region 651650			1489 bp distal
Rr651651	regulatory region 651651			1787 bp distal
Rr651652	regulatory region 651652			744 bp distal
Tssr68031	transcription start site region 68031			1472 bp downstream
Tssr73641	transcription start site region 73641			1894 bp upstream
Tssr73642	transcription start site region 73642			1818 bp upstream
Tssr73643	transcription start site region 73643			1605 bp upstream