rs31928402 SNP Detail

Summary

• ID
  rs31928402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101364335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAG ATGTCATCTC ATTTGGCCAC
  Y
  GTGTCTAAAA ATGGCACTTG TTAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45587222	mCV22691133	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147123430	ENSMUSSNP3698491	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31928402					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101364335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14502	CpG island 14502	1756 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	within coordinates
Rr596168	regulatory region 596168	746 bp distal
Rr596169	regulatory region 596169	564 bp distal
Rr596170	regulatory region 596170	243 bp proximal
Rr596171	regulatory region 596171	524 bp proximal
Rr596172	regulatory region 596172	873 bp proximal
Tssr37997	transcription start site region 37997	339 bp upstream
Tssr37998	transcription start site region 37998	623 bp upstream
Tssr37999	transcription start site region 37999	646 bp upstream
Tssr38000	transcription start site region 38000	717 bp upstream
Tssr38001	transcription start site region 38001	793 bp upstream
Tssr38002	transcription start site region 38002	809 bp upstream
Tssr38003	transcription start site region 38003	961 bp upstream