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rs31888434 SNP Detail
Summary
  • ID
    rs31888434
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr18:42066324 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCATGCTCC CATGCAGGGC
    AGTATCAAGC GAAATATTTT CCTCGTTGTA ATCTCTGTTC AGTCCCTAGA AATCGATGCT
    TTCCCAGGTG GAGAGGACAA GGAAAGCTAC AAAGGCAGAA CTGTACAAGT CAGAGCCTTA
    AATTATTTAA GAATTGAGAA ACAAGACGGA CTTGAATGCC TTTCTAAATA ATAGATTCAA
    M
    GTGCGTATAT AGGGCAAAGG CAGCTATGAA CTCTGGAAAA GCCAGTGATA ATTTGCTGTG
    GACGTGTAAC ATAGTTTCCC ATCGGCAAGT GGAGAAGAAG TTCATTTTCT CTGTAGTTCC
    AGCTTTCTTT CCATTGAGAG AATAACAGTG CTTTAACCCA CAATGGGGAA TGGATGGAAG
    CTGCCATTTT TCCTAGTATA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss49286588 NES12700709 PERLEGEN MM_PANEL2 f SNP A A A A C A A A A C A A C
ss325596260 CHEV_18_42092913 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs31888434 SNP A A A A C A A A A A C A A C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49286588 NES12700709 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:42066324 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D18Mit104 DNA segment, Chr 18, Massachusetts Institute of Technology 104 592 bp distal
Prelid2 PRELI domain containing 2 Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory