rs31886801 SNP Detail

Summary

• ID
  rs31886801
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134485973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTGTCTT ATTTTATTAT
  TATTTAAGAC AATATATGTC TTATTCAGGC TCCAAATCCC TGTAGAGCTA AGAAAAGTTT
  TGCCTTCTTC AAGAATTGCT GAACTGTTTT AGAGGCCAGG TACTTCGATA GAGCTTATTA
  AAGACTGGGG CTTTTCTCCC CTTCACTGAA AAATGTTTTG TATTTTTTAT ATTTAAAAAA
  W
  TTTTTTAAAT GTGTGTTGAG CTGAAGGGGT CTGCAACCCT ATAGGTGGAA CAATATGAAC
  TAACCAGTAC CCCCAGAGCT CATGTCTCTA GCTGCATATA TATCAGAAGA TGACCTAGTT
  GGCCATCATT GGGAAAAGAG GCCCCTTGGT CTTGCAAACT TTATATGCCC CAGTACAGGG
  GAATGCCAGG GCCAAGAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45080847	mCV23638922	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs31886801					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134485973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	1175 bp distal
Cpgi773	CpG island 773	1651 bp proximal
Gm57134	predicted gene, 57134	1133 bp upstream
Kdm5b	lysine demethylase 5B	1943 bp upstream
Rr367005	regulatory region 367005	975 bp downstream
Rr367006	regulatory region 367006	1806 bp upstream
Rr418945	regulatory region 418945	1144 bp distal
Rr418947	regulatory region 418947	1801 bp distal
Rr418948	regulatory region 418948	782 bp distal
Rr418949	regulatory region 418949	1453 bp proximal
Tssr8904	transcription start site region 8904	1922 bp upstream
Tssr8905	transcription start site region 8905	1955 bp upstream
Tssr8906	transcription start site region 8906	1979 bp upstream
Tssr13798	transcription start site region 13798	1233 bp upstream