rs31880057 SNP Detail

Summary

• ID
  rs31880057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95856700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTTAGA CTTTGATAAC
  ATGTTTTAAG TAGAATGTAG TTAGGATCTC AGGGTTAAAG CGTTTAGCTC ACTGTAGACC
  TGCATGTTTA TTTAAATTAC TATTTAGGTT TAGATATTGT ATTTAAGATT GTTAGGAAAG
  AAGGCAGTAT TACTTTAATG ATCCCATTTG TTTAAAAACA AATGTCTAAT CATAGGGTGT
  R
  TTCAGGTCTG CAATTTTGTG CTCTGATCAT CTGACTGAGA TGGTAAACTG GGTTCTTTAT
  GATGTCACTG ACTTCCCTAT GAGGTCACAT GGAGTTCAAG AGTTTCTTAA ACTATACTGC
  AATATTTCCA AGTGCTATGA CCATATCCTT TCTTAAAGCA GTATTTTGAC TTCCTACTTT
  GTGCTGGCCT CACAGGAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45580852	mCV22711223	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss147069054	ENSMUSSNP4430948	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31880057					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95856700 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530080O11Rik	RIKEN cDNA 9530080O11 gene			808 bp upstream
Cpgi14458	CpG island 14458			532 bp distal
Hook1	hook microtubule tethering protein 1			Intron
				Noncoding-Transcript-Variant
Rr398349	regulatory region 398349			1200 bp downstream
Rr595499	regulatory region 595499			1505 bp distal
Rr595500	regulatory region 595500			1084 bp distal
Rr595501	regulatory region 595501			318 bp distal
Tssr37834	transcription start site region 37834			1318 bp downstream
Tssr37835	transcription start site region 37835			1143 bp downstream
Tssr37836	transcription start site region 37836			1082 bp downstream
Tssr37837	transcription start site region 37837			1060 bp downstream
Tssr37838	transcription start site region 37838			1037 bp downstream
Tssr37839	transcription start site region 37839			1456 bp upstream
Tssr37840	transcription start site region 37840			1487 bp upstream
Tssr42465	transcription start site region 42465			1446 bp upstream