rs31870623 SNP Detail

Summary

• ID
  rs31870623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172347130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG AAAATGGCTG ATAGGTTGCC
  R
  CCTGGATGTC CGATGAGTTG ATTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45079064	mCV24953494	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss120011756	PARCsnp_1.19956	PARC_SEQ	INBRED	f	SNP		G	A
ss120014639	PARCsnp_1.10008	PARC_SEQ	INBRED	f	SNP		G	A
ss146194211	ENSMUSSNP5251965	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31870623					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172347130 () rs orientation: forward

Symbol	Name	Function Class
Cfap45	cilia and flagella associated protein 45	1567 bp upstream
Cpgi1054	CpG island 1054	1400 bp proximal
Gm70635	predicted gene, 70635	596 bp downstream
Rr372460	regulatory region 372460	within coordinates
Rr423607	regulatory region 423607	1337 bp distal
Rr423608	regulatory region 423608	991 bp proximal
Rr423609	regulatory region 423609	1492 bp proximal
Tssr10237	transcription start site region 10237	1543 bp upstream