rs31777403 SNP Detail

Summary

• ID
  rs31777403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148214260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCCCTA CAGGTAGATC
  CTATTGTCCC TGTTTTATGA CGGAGACACT AAGGCTCAGA CCTACACTCC TTTGTGTAAG
  ACTGCTTACT TCCAGAGCCC CAAGCCTAGA GTGACAGCAA CAAACCAGTT GAGAACATCT
  TGTCTGCTAC CAGACTGGGG TGATGGACTA AAGGGACAAG CAGCAGTAGC AAGGGTCACT
  R
  CCTGAAAGAG TGAAGGCCAA GAGAGTACCC AGCTGAGATG CCCAGACAAA ACTTGTTAGG
  GAAACCCAGG AACACTCACT CCTTAAACAC AAGCTCTGGC TCCGGAAGGC AGCTGAGCCC
  TTGTGTCTGA AAAGCCTCAT GGTGGGAAAA GCCCAAGCCA TCCCAGAGAA TGGAACTAGG
  TGCCCTCGAG GCGTAAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45570028	mCV24936152	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147993950	ENSMUSSNP3693125	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31777403					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148214260 () rs orientation: forward

Symbol	Name	Function Class
Draxin	dorsal inhibitory axon guidance protein	Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2	581 bp upstream
Rr604596	regulatory region 604596	within coordinates
Rr604597	regulatory region 604597	284 bp proximal
Rr604598	regulatory region 604598	885 bp proximal
Rr604599	regulatory region 604599	1123 bp proximal
Tssr1378	transcription start site region 1378	1030 bp upstream
Tssr40251	transcription start site region 40251	939 bp upstream
Tssr40252	transcription start site region 40252	972 bp upstream
Tssr40253	transcription start site region 40253	1080 bp upstream
Tssr44585	transcription start site region 44585	835 bp downstream
Tssr44586	transcription start site region 44586	848 bp downstream
Tssr44587	transcription start site region 44587	875 bp downstream