rs31775513 SNP Detail

Summary

• ID
  rs31775513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138919541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGG AAACGGGCTG ATTCTCTGTA
  Y
  ATAATGTAAA AAAGTATATG AAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45569467	mCV23716348	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147667615	ENSMUSSNP5740876	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31775513					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138919541 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta	669 bp upstream
Cpgi15162	CpG island 15162	115 bp proximal
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	within coordinates
Rr603134	regulatory region 603134	477 bp proximal
Rr603135	regulatory region 603135	705 bp proximal
Rr603136	regulatory region 603136	867 bp proximal
Tssr39900	transcription start site region 39900	687 bp upstream
Tssr39901	transcription start site region 39901	712 bp upstream
Tssr39902	transcription start site region 39902	736 bp upstream
Tssr39903	transcription start site region 39903	1004 bp upstream
Tssr39904	transcription start site region 39904	1049 bp upstream
Tssr39905	transcription start site region 39905	1079 bp upstream
Tssr39906	transcription start site region 39906	1856 bp upstream
Tssr44214	transcription start site region 44214	225 bp downstream
Tssr44215	transcription start site region 44215	384 bp downstream
Tssr44216	transcription start site region 44216	411 bp downstream
Tssr44217	transcription start site region 44217	434 bp downstream
Tssr44218	transcription start site region 44218	1766 bp downstream