rs31769527 SNP Detail

Summary

• ID
  rs31769527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138918349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA CACAGCTAGC TGTACCTGGC
  Y
  TTTACATGCT GTGGATCAGA GAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45569106	mCV23716338	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147667600	ENSMUSSNP60469	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321380203	CHEV_4_138746953	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31769527					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138918349 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	814 bp downstream
Capzb	capping actin protein of muscle Z-line subunit beta	1861 bp upstream
Cpgi15162	CpG island 15162	1307 bp proximal
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	598 bp proximal
Rr603134	regulatory region 603134	1669 bp proximal
Rr603135	regulatory region 603135	1897 bp proximal
Tssr39900	transcription start site region 39900	1879 bp upstream
Tssr39901	transcription start site region 39901	1904 bp upstream
Tssr39902	transcription start site region 39902	1928 bp upstream
Tssr44214	transcription start site region 44214	1417 bp downstream
Tssr44215	transcription start site region 44215	1576 bp downstream
Tssr44216	transcription start site region 44216	1603 bp downstream
Tssr44217	transcription start site region 44217	1626 bp downstream