rs31726151 SNP Detail

Summary

• ID
  rs31726151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162692212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGAGCATG CTCCTCCATT ATTGAGATAC TATGTGGGCA
  TGGGGAATCT CATTTCCAAA GACAGAGGGG CCTTGAGTTA TTTAAGAGTG CCAGAGAGCA
  Y
  AGTGATATTC AGTGTTTTGA ACCATAGTTT ATGGTAGCTC AGATATAAGT ATTTTTTTTA
  GTATTTTTTA TTGGTTATTT TATTTATTTA CATTTTAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45063418	mCV23041830	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145945101	ENSMUSSNP4821880	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31726151					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162692212 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	88 bp distal
Rr422027	regulatory region 422027	183 bp proximal
Rr422028	regulatory region 422028	1813 bp proximal
Rr422029	regulatory region 422029	1957 bp proximal
Tssr14673	transcription start site region 14673	1716 bp downstream
Tssr14674	transcription start site region 14674	1782 bp downstream
Tssr14675	transcription start site region 14675	1797 bp downstream
Tssr14676	transcription start site region 14676	1820 bp downstream
Tssr14677	transcription start site region 14677	1840 bp downstream
Tssr14678	transcription start site region 14678	1859 bp downstream