rs31662424 SNP Detail

Summary

• ID
  rs31662424
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119350266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTAAGA AGTGCAAACT
  GTCCACATAT GCTGTGTTGG AGGCTGGAGG ACTTGTGGGT GGGTATGAGA TAACCAAGCT
  AGACAGACAG GAAGAGGAAC AGGGGCTCTG AACTAGTGAC CACAAGCTGG GTGGCCTGTG
  CAAAGCCCTC AAGAAACTTC TCTAAGGCTC TAATGTCCTC TCATACCTTT TTTTCTTCTA
  W
  TACAGCTAAC TGGAACAGAC TAGATTATAG GTAATGATGG CTAGCTTCCA CCTAGGATAT
  AACCCTAGAC CACCCTAGGT AAGAAGCTTG AGGTAGCCAA GAAAGAATAT AGCTACATCT
  TGGTAACTGG GATACTCTGC CTCAGCACAG CTACAAACTA ACTGTGAATG TGAGAACACA
  GAGAGCTGGG GGATAAGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48075537	NES11873550	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31662424					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075537	NES11873550	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119350266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adipor2	adiponectin receptor 2			Intron
				Noncoding-Transcript-Variant
Rr637647	regulatory region 637647			1445 bp distal
Rr637648	regulatory region 637648			1741 bp proximal
Rr637649	regulatory region 637649			1907 bp proximal
Rr637650	regulatory region 637650			1945 bp proximal