rs31661948 SNP Detail

Summary

• ID
  rs31661948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36568586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agctgatat cttGTGCCTT Ctttatttat
  ttatttatta tatgtaagta cactgtagct gtcttcagat gtccaaaaga tggcgtcaga
  tctcattaca gatggttgtg agccaccgtg tggttgttga aatttgaacc caggaccttc
  R
  ggagagcagt cagtgttctt aactgcagag ccatctctcc agcccTATCT AGTTTTAAAC
  AGTTGTAATA GAACTATGGT TTTTGTATCT GTGTGTTCAC TACTATTAGG GAAGAGATAG
  ATTTTTGTTT GTATTGTATC CTGGACTATT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45057090	mCV27595049	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss148927550	ENSMUSSNP1167602	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss319688947	CHEV_1_36586350	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31661948					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36568586 () rs orientation: forward

Symbol	Name	Function Class
Ankrd23	ankyrin repeat domain 23	683 bp downstream
Cnnm3	cyclin M3	1268 bp downstream
Gm38033	predicted gene, 38033	1268 bp upstream
Gm42417	predicted gene, 42417	688 bp downstream
Rr409335	regulatory region 409335	778 bp distal