rs3166023 SNP Detail

Summary

• ID
  rs3166023
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105354821 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGGA TAGAGAAAGC TAACTTCTGT
  K
  TTAAAAAGTG AAGTTGGAAA TAACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37616440	NES09072190	PERLEGEN	MM_PANEL2	r	SNP	A		C	C	C	A	C		C	C	A		C		C	C		A
ss45356702	mCV22346511	ABI	CRAMUS_MOUSE	r	SNP		A	C					C
ss147167829	ENSMUSSNP1715163	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	C											C
ss320447922	CHEV_2_105364633	CHEVERUD	SCREENING_POP	r	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3166023					SNP	T	T	G	G	G	T	G	G	G	G	T	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37616440	NES09072190	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105354821 () rs orientation: reverse

Symbol	Name	Function Class
4930527A07Rik	RIKEN cDNA 4930527A07 gene	within coordinates
Rr562248	regulatory region 562248	541 bp distal
Rr562249	regulatory region 562249	1246 bp distal
Rr562250	regulatory region 562250	1068 bp distal
Rr562251	regulatory region 562251	793 bp distal