rs31656746 SNP Detail

Summary

• ID
  rs31656746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75458150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGATCAG ATGGTCTTTC TCTTACATTT TGCAGAGTGG
  GCAGGGAAAA TGTCCCCCAC AAGGATTTAG GATATGTATG GGTGTCCAAA GATTCCCCCC
  Y
  CCTGCTCTGG GTACCTCCTC CCTCTGCATG GTGCTCTGGA TAGCTTCATC CCTTGCCCTC
  AGCTCTAGTA ATCATCCTAC CCATCTTGGA TGCCCCTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45055942	mCV25162867	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss144695204	ENSMUSSNP6908855	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31656746					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75458150 () rs orientation: forward

Symbol	Name	Function Class
Rr413452	regulatory region 413452	1916 bp distal
Rr413453	regulatory region 413453	1794 bp distal
Tmem198	transmembrane protein 198	Intron
Tssr7538	transcription start site region 7538	1989 bp downstream
Tssr7539	transcription start site region 7539	1913 bp downstream