rs31650621 SNP Detail

Summary

• ID
  rs31650621
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116456999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATATGA AATGTGATAT
  TAACAGTACT GACATTTACT TTGAGGCAGC ACATTATGTA GACCAGGCTG GCCTCAAACT
  GAGAGATCTC CCTGACTACC TCCCATATTG TGATCAAAGT CATGTGCCAC CATGTCTAGC
  AAAGTCTTCA TTTTGGTAAC TGTTGGAAAA CTTTCCTTTA AATATACCTT CAGTGCTAGG
  W
  ATGAACGAGC ACAACACATG CTTTCCCCCA TCAAACTGTT CGATAAAGGG GAACTGGAAA
  CAAACCAAAC TGTGGCAACA GCGATCCTGG ATGTGGTGGC TCTAAGTAAG ATAAATGTTC
  CCAAACTCAG TGATATTCCT CCCTGGGAGA AGTGGAAGGG GCTCCCTCCC TCTCCTGGCT
  TGTGGCCTGG TTAGTGATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45556763	mCV23499233	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss135670764	ENSMUSSNP5295058	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31650621					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116456999 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	382 bp upstream
Cpgi13738	CpG island 13738	322 bp distal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	735 bp upstream
Rr375625	regulatory region 375625	680 bp upstream
Rr397966	regulatory region 397966	549 bp downstream
Rr583758	regulatory region 583758	684 bp distal
Rr583759	regulatory region 583759	183 bp distal
Tssr31364	transcription start site region 31364	1575 bp downstream
Tssr35324	transcription start site region 35324	1246 bp upstream
Tssr35325	transcription start site region 35325	1011 bp upstream
Tssr35326	transcription start site region 35326	802 bp upstream
Tssr35327	transcription start site region 35327	780 bp upstream
Tssr35328	transcription start site region 35328	766 bp upstream
Tssr35329	transcription start site region 35329	709 bp upstream
Tssr35330	transcription start site region 35330	696 bp upstream