rs31644477 SNP Detail

Summary

• ID
  rs31644477
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90520025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGTAGCAA AATTATAGCT ATGAAGTAGA AACGAGAATA
  ACTTTATGAT TGGGGGACCA CCACAACTTG AAGAACAGTA TTAAAGGGCC GCAGCATTAG
  W
  CAGGTTGAGT GAGAACCATT TCTTAGAGGA TGTGGTAGAC AGACTGCTTC CCCTCCCTCA
  CTTGGGGACC TTGCCACTAG AGGGCAACAG CATCAGTGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45555230	mCV24985115	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss135477187	ENSMUSSNP535173	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss320838148	CHEV_3_90416640	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31644477					SNP	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90520025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	268 bp proximal
Gm57853	predicted gene, 57853	466 bp upstream
Rr580416	regulatory region 580416	335 bp distal
Rr580417	regulatory region 580417	within coordinates
Rr580418	regulatory region 580418	70 bp proximal
S100a5	S100 calcium binding protein A5	938 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)	164 bp upstream
Tssr30242	transcription start site region 30242	422 bp downstream
Tssr30243	transcription start site region 30243	114 bp upstream
Tssr30244	transcription start site region 30244	151 bp upstream
Tssr30245	transcription start site region 30245	182 bp upstream
Tssr30246	transcription start site region 30246	428 bp upstream
Tssr30247	transcription start site region 30247	458 bp upstream
Tssr30248	transcription start site region 30248	564 bp upstream
Tssr30249	transcription start site region 30249	801 bp upstream
Tssr30250	transcription start site region 30250	1010 bp upstream
Tssr30251	transcription start site region 30251	1057 bp upstream
Tssr30252	transcription start site region 30252	1628 bp upstream
Tssr30253	transcription start site region 30253	1652 bp upstream
Tssr34246	transcription start site region 34246	1693 bp downstream