rs31644325 SNP Detail

Summary

• ID
  rs31644325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121436719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGCAAGG AGGGATGCAC TCAGCCTATA TAGATCCATA
  CCAAAACTCA AAATTAACTT TTAGAAAGCC AACGATGTCA AAGGCACATT AGAAGTTTGA
  Y
  TGGAACTGAT GCCTTGTCAA TAAAACTATA TCAGCTTTGT AAAAATGATA TGACTTAAGT
  GTACAATCAA TATTCATGAA TTAATAAATG CCATATATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45555529	mCV23896184	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss135725807	ENSMUSSNP934908	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
ss320904488	CHEV_3_121345988	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31644325					SNP	C	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121436719 () rs orientation: forward

Symbol	Name	Function Class
A730020M07Rik	RIKEN cDNA A730020M07 gene	within coordinates
Rr584136	regulatory region 584136	127 bp proximal
Rr584137	regulatory region 584137	325 bp proximal