rs31643279 SNP Detail

Summary

• ID
  rs31643279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138447041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT CATCCCACAA AACCCTGGCA
  Y
  CTGTTTCCCT GCCCGTGTGC CAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45554179	mCV25331755	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135956712	ENSMUSSNP5389817	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320981109	CHEV_3_138404244	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31643279					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138447041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13879	CpG island 13879	434 bp proximal
Rr367566	regulatory region 367566	1807 bp upstream
Rr586188	regulatory region 586188	425 bp proximal
Rr586189	regulatory region 586189	926 bp proximal
Rr586190	regulatory region 586190	1052 bp proximal
Tspan5	tetraspanin 5	568 bp upstream
Tssr32003	transcription start site region 32003	948 bp upstream
Tssr32004	transcription start site region 32004	1043 bp upstream