rs3163343 SNP Detail

Summary

• ID
  rs3163343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100401278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCC TGGCAGAATA TCAAAGCTGT
  K
  CCAACCCCCT CCTAGCCACC TCTAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45419273	mCV23821488	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss135539869	ENSMUSSNP718215	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss320849008	CHEV_3_100297885	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3163343					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100401278 () rs orientation: forward

Symbol	Name	Function Class
Gm12474	predicted gene 12474	within coordinates
Gm40106	predicted gene, 40106	697 bp downstream
Gm64500	predicted gene, 64500	688 bp downstream
Rr581866	regulatory region 581866	1600 bp proximal