rs3162900 SNP Detail

Summary

• ID
  rs3162900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:64125562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA GAAGTGGATT CTATCTAGAA
  R
  ACTCGAGTGA GCAAGAATAC AGCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47414895	NES11046114	PERLEGEN	MM_PANEL2	f	SNP		A	G	G	A	G	A		G	A	G		G
ss149161584	ENSMUSSNP7240727	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A					A
ss319744730	CHEV_1_64132977	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3162900					SNP	A	A	G	G	A	G	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47414895	NES11046114	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64125562 () rs orientation: forward

Symbol	Name	Function Class
Gm13748	predicted gene 13748	within coordinates
Klf7	Kruppel-like transcription factor 7 (ubiquitous)	Intron
Rr886	regulatory region 886	956 bp proximal
Rr366923	regulatory region 366923	1513 bp upstream
Rr412234	regulatory region 412234	1445 bp distal
Rr412235	regulatory region 412235	233 bp distal
Rr412236	regulatory region 412236	1129 bp proximal
Tssr7078	transcription start site region 7078	1787 bp upstream