rs31613336 SNP Detail

Summary

• ID
  rs31613336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90520995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCACAGAT CCCAAAGCCC CTTCCATTCT TATATCCCTC
  ACCTAAGTTG CCCCGGCTGC CACCTGTGTT GGCTTGAGAC TGACTGCCTC AGGCAGGGGG
  R
  TGGTGAGAGA ACTCTCTGCT ATCAGCAGCA CTGACTAGCC CCTCTGTCAA ACAGCTTCTT
  CTAGCCCAGT GATCAGTCAT GGCATGCCCT CTGGATCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45552387	mCV24984928	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135477196	ENSMUSSNP5326133	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320838152	CHEV_3_90417610	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31613336					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90520995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13468	CpG island 13468			322 bp distal
Gm57853	predicted gene, 57853			Intron
				Noncoding-Transcript-Variant
Rr397814	regulatory region 397814			1733 bp upstream
Rr580416	regulatory region 580416			1305 bp distal
Rr580417	regulatory region 580417			373 bp distal
Rr580418	regulatory region 580418			879 bp distal
Rr580419	regulatory region 580419			1894 bp proximal
S100a5	S100 calcium binding protein A5			1908 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)			Intron
				Noncoding-Transcript-Variant
Tssr30242	transcription start site region 30242			1392 bp downstream
Tssr30243	transcription start site region 30243			823 bp downstream
Tssr30244	transcription start site region 30244			807 bp downstream
Tssr30245	transcription start site region 30245			709 bp downstream
Tssr30246	transcription start site region 30246			531 bp downstream
Tssr30247	transcription start site region 30247			496 bp downstream
Tssr30248	transcription start site region 30248			396 bp downstream
Tssr30249	transcription start site region 30249			152 bp downstream
Tssr30250	transcription start site region 30250			40 bp upstream
Tssr30251	transcription start site region 30251			87 bp upstream
Tssr30252	transcription start site region 30252			658 bp upstream
Tssr30253	transcription start site region 30253			682 bp upstream
Tssr34246	transcription start site region 34246			723 bp downstream