rs31601458 SNP Detail

Summary

• ID
  rs31601458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87822402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT CACCTCCAGC TCCCTTCCTA
  Y
  ATACACCCTG TGCCCCAGGA TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45550976	mCV23484528	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135468750	ENSMUSSNP4176106	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320835496	CHEV_3_87719017	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs31601458					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87822402 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	mRNA-UTR
Tssr29850	transcription start site region 29850	150 bp downstream
Tssr29851	transcription start site region 29851	15 bp downstream
Tssr29852	transcription start site region 29852	within coordinates
Tssr29853	transcription start site region 29853	66 bp upstream
Tssr29854	transcription start site region 29854	181 bp upstream
Tssr29855	transcription start site region 29855	389 bp upstream
Tssr29856	transcription start site region 29856	442 bp upstream
Tssr29857	transcription start site region 29857	465 bp upstream
Tssr29858	transcription start site region 29858	483 bp upstream
Tssr29859	transcription start site region 29859	517 bp upstream
Tssr29860	transcription start site region 29860	655 bp upstream
Tssr29861	transcription start site region 29861	694 bp upstream