rs31595680 SNP Detail

Summary

• ID
  rs31595680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180234399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCG ATGCCTTCCA TGCCTGAGCA
  R
  TCAGGGGTTG GTCCTGATGA AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45049073	mCV23630741	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146380456	ENSMUSSNP4074220	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320159862	CHEV_1_182336965	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31595680					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180234399 () rs orientation: forward

Symbol	Name	Function Class
Gm39712	predicted gene, 39712	899 bp upstream
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr424494	regulatory region 424494	within coordinates
Rr424495	regulatory region 424495	432 bp proximal
Rr424496	regulatory region 424496	1941 bp proximal