rs31564117 SNP Detail

Summary

• ID
  rs31564117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172302569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC GCTCATCTTT TCTAATGCCA
  Y
  GAAGATGCGT TTAGCAGGGG CTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751706	NES13028084	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		T	C	C		T	C	C	C		C
ss120011347	PARCsnp_1.19752	PARC_SEQ	INBRED	f	SNP							T		C
ss120014414	PARCsnp_1.09783	PARC_SEQ	INBRED	f	SNP							T		C
ss146193204	ENSMUSSNP1686123	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
ss320125594	CHEV_1_174405133	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31564117					SNP	C	C	C	C	T	C	T	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751706	NES13028084	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172302569 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	188 bp downstream
Gm70809	predicted gene, 70809	29 bp downstream
Gm70814	predicted gene, 70814	within coordinates
Rr396588	regulatory region 396588	1664 bp downstream
Rr423578	regulatory region 423578	64 bp proximal
Slamf9	SLAM family member 9	358 bp upstream
Tssr10198	transcription start site region 10198	369 bp upstream
Tssr10199	transcription start site region 10199	385 bp upstream
Tssr10200	transcription start site region 10200	425 bp upstream
Tssr15219	transcription start site region 15219	163 bp downstream