rs31562993 SNP Detail

Summary

• ID
  rs31562993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172304186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC CTGAGCTTCA GCCACAGGGA
  R
  AATGAACAGG AACAAGGAGG CAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss45106428	mCV23005045	ABI	CRAMUS_MOUSE	f	SNP		G	G			A		G
ss49751701	NES13028072	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A		A	G	G		A		G
ss120011360	PARCsnp_1.19758	PARC_SEQ	INBRED	f	SNP						A		G
ss120014420	PARCsnp_1.09789	PARC_SEQ	INBRED	f	SNP						A		G
ss146193222	ENSMUSSNP1274890	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss320125600	CHEV_1_174406750	CHEVERUD	SCREENING_POP	f	SNP										G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs31562993					SNP	G	G	G	G	A	A	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751701	NES13028072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172304186 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	1805 bp downstream
Gm70809	predicted gene, 70809	1646 bp downstream
Gm70813	predicted gene, 70813	1943 bp downstream
Gm70814	predicted gene, 70814	988 bp upstream
Rr423578	regulatory region 423578	1251 bp distal
Slamf9	SLAM family member 9	Intron
Tssr10198	transcription start site region 10198	1235 bp downstream
Tssr10199	transcription start site region 10199	1207 bp downstream
Tssr10200	transcription start site region 10200	1185 bp downstream
Tssr15219	transcription start site region 15219	1419 bp upstream