rs3156074 SNP Detail

Summary

• ID
  rs3156074
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28078744 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGAGC TACGCCGCGG GGGCGCGTCC
  S
  GGAAGCTCTA GTGGCCACGC CCCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46093846	mCV22873174	ABI	CRAMUS_MOUSE	r	SNP	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3156074					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28078744 () rs orientation: reverse

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	1093 bp downstream
Gm73795	predicted gene, 73795	1930 bp upstream
Rr368284	regulatory region 368284	1215 bp upstream
Rr400210	regulatory region 400210	within coordinates
Rr644240	regulatory region 644240	1365 bp distal
Rr644241	regulatory region 644241	329 bp distal
Rr644242	regulatory region 644242	75 bp distal
Rr644243	regulatory region 644243	within coordinates
Rr644244	regulatory region 644244	811 bp proximal
Rr644245	regulatory region 644245	924 bp proximal
Rr644246	regulatory region 644246	1440 bp proximal
Rr644247	regulatory region 644247	1941 bp proximal
Tssr2163	transcription start site region 2163	37 bp downstream
Tssr2164	transcription start site region 2164	170 bp downstream
Tssr2165	transcription start site region 2165	213 bp downstream
Tssr65463	transcription start site region 65463	1824 bp downstream
Tssr65464	transcription start site region 65464	1266 bp downstream
Tssr65465	transcription start site region 65465	33 bp upstream
Tssr65466	transcription start site region 65466	1940 bp upstream
Tssr65467	transcription start site region 65467	1964 bp upstream
Tssr71496	transcription start site region 71496	1688 bp upstream
Tssr71497	transcription start site region 71497	1440 bp upstream
Tssr71498	transcription start site region 71498	1379 bp upstream
Tssr71499	transcription start site region 71499	1285 bp upstream
Tssr71500	transcription start site region 71500	1261 bp upstream
Tssr71501	transcription start site region 71501	1234 bp upstream
Tssr71502	transcription start site region 71502	1209 bp upstream
Tssr71503	transcription start site region 71503	1168 bp upstream
Tssr71504	transcription start site region 71504	1137 bp upstream
Tssr71505	transcription start site region 71505	1120 bp upstream
Tssr71506	transcription start site region 71506	1106 bp upstream
Tssr71507	transcription start site region 71507	1059 bp upstream
Tssr71508	transcription start site region 71508	1025 bp upstream
Tssr71509	transcription start site region 71509	965 bp upstream
Tssr71510	transcription start site region 71510	921 bp upstream
Tssr71511	transcription start site region 71511	885 bp upstream
Tssr71512	transcription start site region 71512	805 bp upstream
Tssr71513	transcription start site region 71513	218 bp upstream
Tssr71514	transcription start site region 71514	84 bp upstream
Tssr71515	transcription start site region 71515	56 bp upstream
Tssr71516	transcription start site region 71516	962 bp downstream
Tssr71517	transcription start site region 71517	1608 bp downstream
Tssr71518	transcription start site region 71518	1630 bp downstream
Tssr71519	transcription start site region 71519	1651 bp downstream
Tssr71520	transcription start site region 71520	1695 bp downstream
Tssr71521	transcription start site region 71521	1707 bp downstream
Tssr71522	transcription start site region 71522	1749 bp downstream
Tssr71523	transcription start site region 71523	1973 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR