rs3156073 SNP Detail

Summary

• ID
  rs3156073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28078767 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGGG GCCTAGTACC AGGCCGGCCG
  R
  GCTACGCCGC GGGGGCGCGT CCCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46023158	mCV22873175	ABI	CRAMUS_MOUSE	r	SNP	C	T	T	T
ss148632723	ENSMUSSNP5055391	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3156073					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28078767 () rs orientation: reverse

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	1070 bp downstream
Gm73795	predicted gene, 73795	1907 bp upstream
Rr368284	regulatory region 368284	1192 bp upstream
Rr400210	regulatory region 400210	within coordinates
Rr644240	regulatory region 644240	1388 bp distal
Rr644241	regulatory region 644241	352 bp distal
Rr644242	regulatory region 644242	98 bp distal
Rr644243	regulatory region 644243	within coordinates
Rr644244	regulatory region 644244	788 bp proximal
Rr644245	regulatory region 644245	901 bp proximal
Rr644246	regulatory region 644246	1417 bp proximal
Rr644247	regulatory region 644247	1918 bp proximal
Tssr2163	transcription start site region 2163	14 bp downstream
Tssr2164	transcription start site region 2164	147 bp downstream
Tssr2165	transcription start site region 2165	190 bp downstream
Tssr65463	transcription start site region 65463	1847 bp downstream
Tssr65464	transcription start site region 65464	1289 bp downstream
Tssr65465	transcription start site region 65465	10 bp upstream
Tssr65466	transcription start site region 65466	1917 bp upstream
Tssr65467	transcription start site region 65467	1941 bp upstream
Tssr71496	transcription start site region 71496	1711 bp upstream
Tssr71497	transcription start site region 71497	1463 bp upstream
Tssr71498	transcription start site region 71498	1402 bp upstream
Tssr71499	transcription start site region 71499	1308 bp upstream
Tssr71500	transcription start site region 71500	1284 bp upstream
Tssr71501	transcription start site region 71501	1257 bp upstream
Tssr71502	transcription start site region 71502	1232 bp upstream
Tssr71503	transcription start site region 71503	1191 bp upstream
Tssr71504	transcription start site region 71504	1160 bp upstream
Tssr71505	transcription start site region 71505	1143 bp upstream
Tssr71506	transcription start site region 71506	1129 bp upstream
Tssr71507	transcription start site region 71507	1082 bp upstream
Tssr71508	transcription start site region 71508	1048 bp upstream
Tssr71509	transcription start site region 71509	988 bp upstream
Tssr71510	transcription start site region 71510	944 bp upstream
Tssr71511	transcription start site region 71511	908 bp upstream
Tssr71512	transcription start site region 71512	828 bp upstream
Tssr71513	transcription start site region 71513	241 bp upstream
Tssr71514	transcription start site region 71514	107 bp upstream
Tssr71515	transcription start site region 71515	79 bp upstream
Tssr71516	transcription start site region 71516	939 bp downstream
Tssr71517	transcription start site region 71517	1585 bp downstream
Tssr71518	transcription start site region 71518	1607 bp downstream
Tssr71519	transcription start site region 71519	1628 bp downstream
Tssr71520	transcription start site region 71520	1672 bp downstream
Tssr71521	transcription start site region 71521	1684 bp downstream
Tssr71522	transcription start site region 71522	1726 bp downstream
Tssr71523	transcription start site region 71523	1950 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR