rs31557237 SNP Detail

Summary

• ID
  rs31557237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTGAGA CCCTTTTCCA
  AGTGATTCTA CATTGTACCA AGTAAACATG TAACATAAAG CGAACTATCC ATCACTCTAC
  ACCAAGAGTG TACATAGGAT AAAGGCTCCT CTTCTGAGGA AAGTTTTTCT TACCTTAATT
  CTATATAATC CTTCTCAAAT CTGATTTTCT CTATATCATT GATCAACATT GATAATCTGA
  R
  TGGTTTAAAA TCTTTCCATG ACATTAACAA CTCTAATTTA CACCCTTCTT TAAATTACTG
  TCATTATTAT TGTTGTTTTC TTTTTGAGAT AGTGTCTCAC TATGTAGCCC TGGTTGGCTT
  GAAACTCAGA GCAATCCACC TGCTTCTGCC TTCTGAGTGT TGATATTAAA ATGTATGTGC
  CACTATTCTT GACCTGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49751713	NES13028088	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31557237					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751713	NES13028088	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301295 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	295 bp upstream
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	254 bp downstream
Rr396588	regulatory region 396588	390 bp downstream
Rr423578	regulatory region 423578	1338 bp proximal
Slamf9	SLAM family member 9	1632 bp upstream
Tssr10198	transcription start site region 10198	1643 bp upstream
Tssr10199	transcription start site region 10199	1659 bp upstream
Tssr10200	transcription start site region 10200	1699 bp upstream
Tssr15219	transcription start site region 15219	1437 bp downstream