rs31545507 SNP Detail

Summary

• ID
  rs31545507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121078176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACTTTTGG AACATCTCTC TATATTAAAA GGACTAATTA
  GAATGACTTA CAGGCTGCAG TCTGATTAAC CCAACAATAG ACATTTGTGG ATGGGAAGTC
  Y
  AAGAATTTAG TAGTTGCTCA GTCCCACGAG GCTGGGTGGG ACTTCTGCAT AAACAGCAGG
  AATTCTGTAT AAACAGCATT TTTAGTTACC CTGCTCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45546113	mCV23993570	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss135717525	ENSMUSSNP5052183	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31545507					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121078176 () rs orientation: forward

Symbol	Name	Function Class
Rr584034	regulatory region 584034	767 bp proximal
Rr584035	regulatory region 584035	1951 bp proximal
Tlcd4	TLC domain containing 4	1420 bp upstream
Tssr35409	transcription start site region 35409	1497 bp upstream
Tssr35410	transcription start site region 35410	1469 bp upstream
Tssr35411	transcription start site region 35411	1424 bp upstream