rs31535924 SNP Detail

Summary

• ID
  rs31535924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116324579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATACCGGA GGACTTGGAC
  ATCTTAAACT CTTCAGTTAC CTTTCCTCTA CTCTTGAGTT TCGTTATAAT CCTATTTTTA
  GTGAAATCAA TAATTAATAT TTAATCAGTG ACCTATTGTT GAATCACAGA GTCACCTAGG
  AGTCTGTGAC TATATCCCAT CTCATTAAAA AATTTGTTAT CTAATTTTGT CTCTATTTAA
  Y
  TCTTCAAATG CAAATTTTAT GTTTTCCCCT GATGTTTACT ACTTGCCATT GTTTTGTCTT
  CTCTGTGCTT TCCTCACCTC AGACCAGGGA ATTGGAGCAT AATGGTTTGT TTACACCCAC
  CATTTTGAAA AATATCTGTT ATATGGTATT GTAGTAACAA TAGCAACAAC TACATATTTT
  TGTAATGCAA AATCCAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48062386	NES11706592	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31535924					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062386	NES11706592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116324579 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Marchf8	membrane associated ring-CH-type finger 8			Intron
				mRNA-UTR
Rr637191	regulatory region 637191			420 bp proximal
Rr637192	regulatory region 637192			1847 bp proximal