rs31526778 SNP Detail

Summary

• ID
  rs31526778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123181226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CCAGTGGATC CACACTATCT
  Y
  ACAGTATTTA TGAAGTCAAT GAGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45543401	mCV23482652	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss135764395	ENSMUSSNP6934047	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss320919501	CHEV_3_123090495	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31526778					SNP	C	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123181226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	1509 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	1587 bp upstream
Rr397990	regulatory region 397990	1524 bp downstream
Rr584510	regulatory region 584510	1657 bp distal
Rr584511	regulatory region 584511	979 bp distal
Tssr35499	transcription start site region 35499	1905 bp upstream
Tssr35500	transcription start site region 35500	1584 bp upstream
Tssr35501	transcription start site region 35501	1567 bp upstream