rs31526001 SNP Detail

Summary

• ID
  rs31526001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121435759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTACGTCCT GTGAAACACA CCACGCAAGG CATCCTCCAT
  TGCTAAGGAG CCCGTTTGTG CTTAGCGGTG GCTCTTCCTG CTGCCACTAA ATTCCTTCAG
  Y
  GTCTCTCTCT GCCTTCCTCT TCATCCCACA GATGCCTTTT GTTTTGCCTC ACCATGACTG
  GTGTGAAGCG TACCTTTGCC CCTCAGTTTC CACTCAGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45542929	mCV23896208	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss135725789	ENSMUSSNP4006402	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss320904485	CHEV_3_121345028	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31526001					SNP	C	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121435759 () rs orientation: forward

Symbol	Name	Function Class
A730020M07Rik	RIKEN cDNA A730020M07 gene	within coordinates
Rr584136	regulatory region 584136	1087 bp proximal
Rr584137	regulatory region 584137	1285 bp proximal